PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083700.1
Common NameMTR_7g083700, MtrDRAFT_AC149131g24v2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 315aa    MW: 35492.9 Da    PI: 6.2334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.9e-19127222193
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      f+k+l++sdv++++r+vlpkk ae++   ++++e++ l++ d++g  +W++k+++  +++s++yvl+ ++ +Fv+ +gL+ gD+++ +   + +
  Medtr7g083700.1 127 FQKELKNSDVSSLRRMVLPKKAAEAFlpVLESKEGILLSMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVSTHGLRFGDSIMVYQ--DnQ 217
                      99**************************55666899*********9*******9989999999***9.*****************9993..325 PP

                      EE..E CS
               B3  89 efelv 93 
                      + ++v
  Medtr7g083700.1 218 NHNYV 222
                      55455 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-27120236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-20125228IPR015300DNA-binding pseudobarrel domain
CDDcd100179.31E-23125227No hitNo description
SMARTSM010191.6E-15127229IPR003340B3 DNA binding domain
PfamPF023622.1E-15127224IPR003340B3 DNA binding domain
PROSITE profilePS508639.093127229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMMDEGEGKK KVVVQKTEAC GFMAGVEDEL GFVNVKGDNN NGSGQRIHHD HGFVAAAFGT  60
VHRKKRMARQ RRSSSSTITI HLKNLPSSTT TTTTTTTSHV PISPIPPLFH SLPPAREIDH  120
RRLRFLFQKE LKNSDVSSLR RMVLPKKAAE AFLPVLESKE GILLSMDDLD GLHVWSFKYR  180
FWPNNNSRMY VLENTGDFVS THGLRFGDSI MVYQDNQNHN YVIQAKKACD QDEYMEEAND  240
TINHIFVDDY EVNKSCFDVA YPAMNDTSMS FIYDTTISND SPLDFLGGSM TNYSRIGSVE  300
TFGSVENLSL DDFY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1491310.0AC149131.3 Medicago truncatula chromosome 7 clone mth2-19e15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624470.10.0B3 domain transcription factor
SwissprotQ9LW311e-86FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLQ2HUJ50.0Q2HUJ5_MEDTR; B3 domain transcription factor
STRINGGLYMA19G27336.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98582838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-84B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]